PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA12G08230.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 508aa    MW: 54967.6 Da    PI: 6.5579
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA12G08230.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.4e-09109134126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ++++ C ++ ++G C++G +CkF+H+
  ONIVA12G08230.2 109 PGEPDCTYYVKFGSCRFGMKCKFNHP 134
                      5789*********************8 PP

2zf-CCCH25.91.7e-08219241325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      +e+C++++  G Ck+G  Ck+ H
  ONIVA12G08230.2 219 QEECKYYSTPGGCKFGKACKYLH 241
                      699******************** PP

3zf-CCCH34.63.1e-11266290226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C++++rtG Cky  +CkF+H+
  ONIVA12G08230.2 266 GEKECPYYMRTGSCKYATNCKFHHP 290
                      7899********************9 PP

4zf-CCCH19.91.3e-06413439127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C++f ++G+Ck+  +Ck++H++
  ONIVA12G08230.2 413 PGQPECQHFVKSGFCKFRMKCKYHHPR 439
                      5789*********************96 PP

5zf-CCCH23.87.9e-08458483227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C ++ r+G Ck+G+ C ++H++
  ONIVA12G08230.2 458 DQPVCTYYGRYGVCKFGPACAYNHPF 483
                      6899********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013108135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.258108136IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-6110134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-5113136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103216244IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-4217243IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-6219241IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4222242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793264292IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5264291IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-8266290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6267291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4270289IPR000571Zinc finger, CCCH-type
SMARTSM003560.028412439IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.676412440IPR000571Zinc finger, CCCH-type
SMARTSM003560.0081456483IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732456484IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-5457484IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5458483IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MADADARAPP KSDPGATPIG SISPSSAAPA AGEDEVEVEV EVEEQLAGLA IADQGEELLL  60
PKPTGWEDGP VVVAGDEVSG GEKLPGEVAA AVGVEGAAAD SRPRFPRRPG EPDCTYYVKF  120
GSCRFGMKCK FNHPARKKKS RVKGSNGGSG SGGSNNSSNK ASSPDDEQAP KEEYGSYVPD  180
ISPEVDSLII DVKKGRVEPK ELKVAKEKRK EFISEGSSQE ECKYYSTPGG CKFGKACKYL  240
HRDGKEGKTD AEKVDLNFLG LPLRPGEKEC PYYMRTGSCK YATNCKFHHP DPSNVASKDP  300
QLEHENGDAP QQDVQGSSSQ PNASIWPDQR TVNEHHVPFI APSPSYSAGM LPPQGMYPPP  360
EWNGYHQVPL NPYYPPGVPF QHFPAAPINH PMYKAPEIPG HQQVPSEEYP ERPGQPECQH  420
FVKSGFCKFR MKCKYHHPRS PVPPAGALSP LGLPIKPDQP VCTYYGRYGV CKFGPACAYN  480
HPFNFSPVPA AGPPLLPAQY PTPGNYTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114980.0AK111498.1 Oryza sativa Japonica Group cDNA clone:J013000H23, full insert sequence.
GenBankAK1217740.0AK121774.1 Oryza sativa Japonica Group cDNA clone:J033092M18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620308.10.0PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X8
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A0E0J8Y30.0A0A0E0J8Y3_ORYNI; Uncharacterized protein
STRINGBGIOSGA036378-PA0.0(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.21e-62C3H family protein